Results for "Genome STRiP"
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Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing...2867 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for d...ion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to d...sults, but the method gains power across genomes and processing more genomes...
2812 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...p;a program for aligning sequences to reference genom...
2813 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other sca...ed by mate-pairs. Such sources of information include alignment to a reference genom...
2833 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...d for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genom...
2833 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to ide...of the post-treatment depends on the availability of a reference genom...
2833 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assem...ualization and quality assessment of de novo genome assemblies Citation This so...ualization and quality assessment of de novo genom...
2825 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M...ll. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genom...
2824 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of di...g approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genom...
2823 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on pr...n rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...ataset. It is especially useful for newly sequenced genom...
2820 days ago
