Results for "Genome STRiP"
Top-level pages
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genom...2307 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$...w+)/\u$1/g'perl -ple 's/(?<!['])(\w+)/\u\1/g' # Strip leading whitespace (spaces, t...lineperl -ple 's/^[ \t]+//'perl -ple 's/^\s+//' # Strip trailing whitespace (space, t...2295 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...tation information of a reference genome http://bioinformatics.zj.cn/...g and visualizing sequenced human genom...2277 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alig...ab/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...mer.sourceforge.net/ REPuter http://www.genom...2267 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze t...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic genom...2257 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwe...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host genom...843 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenom...2234 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing stud...ingle‐nucleotide variants as well as insertion/deletions variants in the human genom...2196 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-noteb...###[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...n May 7 11:29:35 2018] Final reduction...#file name genom...
2183 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, fo...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genom...2158 days ago
