Results for "Genome Size"
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Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference geno...2926 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://geno...2925 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The...ution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-geno...
2912 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...age plots (TAGC plots) to visualise the contents of geno...
2902 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assemb...assembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that geno...
2901 days ago
CovCal: Coverage / Read Count Calculator
...or vice versa). Instructions: set the read length/configuration and genome size, then select what you want to c...s as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads...2185 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...relying on prior knowledge, but these do not scale to arbitrarily large genomes and arbitrarily large phylog...lustering genomic and transcriptomic data with no limitation on ge-nome size or phylogenetic distances. We...2899 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...te a lineage probability index (LPI) score for each geno...
2893 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT de...cestral (vertically derived) genes in its recipient geno...
2893 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with u...
2892 days ago
