Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq d...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...ol for MLST directly from the geno...2376 days ago
2356 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&nb...res and reveal cell-type-specific expression changes in type 2 diabetes http://geno...2355 days ago
Tools for bacterial whole genome annotation
...ysis. Takes several hours per genome but I think this is the best...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genomes. PAGIT: Provides a toolkit...2336 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a geno...2319 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network” of interconnected components). The Network ana...2293 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...tation information of a reference genome http://bioinformatics.zj.cn/...g and visualizing sequenced human geno...2288 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the...h; list items in current directory and show in long format to see perimissions, size, and modification date ls -a&...2285 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alig...ab/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...mer.sourceforge.net/ REPuter http://www.geno...2279 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze t...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic geno...2269 days ago