Results for "Genomes"
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GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to...2674 days ago
- ...ation tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, rec...me alignment and visualization of thousands of intraspecific microbial genomes. Genome Biology, 15 (11), 1-1...
2661 days ago
- ...exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constru...re all exons against all exons in other genomes and record significant alignm...e that have exons in all or most of the genomes), join neighboring (adjacent...
2655 days ago
- ...ircular comparisons between a large number of genomes, with a focus on handling gen...and read coverage can be displayed for draft genomes; customized graphs and annota...on or sequence variation in a set of complete genomes, draft genomes or even raw, u...
2644 days ago
- ...e segments between species or strains.It can be easily used to compare, parsing and visualize large genomic sequences, especially closely related genomes such as inter-species or inte...
2644 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...imally scoring chains of ordered gene pairs are computed and reported. This algorithm can be used to mine large evolutionary conserved regions of genomes between two organisms. Altern...2643 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...4 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney -----Read...2634 days ago
YASRA: Reference based assembler
...tive assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et...2632 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of covera...
2632 days ago
- ...e browser, which enables rapid and responsive exploration of bacterial genomes. To use CLgenomics, individu... Each CLG file corresponds with one bacterial genome. If multiple genomes are being considered and comp...
2630 days ago
