List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description...ackage for evolutionary genetics and genomics. http://egglib.sourceforge.n...s-¬‐time coalescent simulator of genomic diversity under arbitrarily c...ex recombination patterns over large genomic...3743 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help you to manage your systems effectively and handle huge amount of genomic/...3711 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data an...more high-level packages like GenomicRanges, ShortRead, Rsamtools, etc. Documentation GenomicRanges Overview The GenomicRa...d that takes a ranked list of genomic regions as input and outputs...Annotation Ranges The GenomicR...3631 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and refere...Sequencing data analysis. JMP Genomics - Next gen visualization and...ource for POSIX. GMAP - GMAP (Genomic Mapping and Alignment Program...whom are at The Institute for Genomic Research in Maryland, USA. PO...3525 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annot...3555 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the o...irst hand experience identifying the genomic basis of disease by analyzing...s, and cross-references with various genomic databases. Collaborate on va...on to create a music melody from DTC-Genomics...3547 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...Centre Port Blair Regional Medical Research Centre Jabalpur Desert Medicine Research Centre Jodhpur...ian Institute of Chemical Technology, Hyderabad IGIB - (Institute of genomics and Integrative Biology) IM...2577 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and refe...quencing data analysis. * JMP Genomics - Next gen visualization and...rce for POSIX. * GMAP - GMAP (Genomic Mapping and Alignment Program...whom are at The Institute for Genomic Research in Maryland, USA. PO...3249 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a...enMAPP Visualization of gene expression and other genomic data on maps representing bio...bsp; Integrated analysis of transcriptome data in genomic,...2293 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ome-wide association studies, genomic prediction, copy number analy...hylation; enable personalized medicine, Mining Stations: Supports...lso be imported from Complete Genomics (cg_process_sample command),...D) each variant hits, variant genomic location and coding effect (ba...2915 days ago