Results for "Git"
Bookmarks
...in genome sizes, heterozygosity levels, and error rates. Availability and Implementation: http://qb.cshl.edu/genomescope/, https://github.com/schatzlab/genomescope.git...2360 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2727 days ago
- ...hole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7...f where you want Progressive Cactus installed: git clone git://github.com/glennh...ely to be able to use the tool. Please submit a GitHub issue so we can help out:...
2679 days ago
TMAP - torrent mapping alignment program General Notes
...ed. To use a supported version, please see the TMAP version associated with a Torrent Suite release below. Get the latest source code: git clone git://github.com/iontorrent/TMAP....2604 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
...ctural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetching tardis git clone https://github.com/Bilk...2536 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...ampleData.tar.gz | tar zxf - ln -s selfSampleData/pacbio_filtered.fastq reads.fq # Install minimap and miniasm (requiring gcc and zlib) git clone https://github.com/lh3/minimap &&...2365 days ago
Alfred: BAM Statistics and Feature Counting
...et Alfred is to download a statically linked binary from the Alfred github release page. Alternativel...dencies are included as submodules so you need to do a recursive clone. git clone --recursive https://git...2308 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test....2160 days ago
GenoViz: Visualization software for genomics
...For more information about IGB, visit http://bioviz.org.Source code for the project was hosted here for many years. In 2014, we moved to a new git repository at http://www...1964 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...install Gooey is via pip pip install Gooey Alternatively, you can install Gooey by cloning the project to your local directory git clone https://github.com/chriskiehl/Gooey.git...1662 days ago
