Results for "Git"
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Comment on "Installing BLAT on Linux !"
Get the code. The best way to do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the entire so...1225 days ago
Comment on "Perl script to count number of Ns in a multifasta file !"
If you want to count all 'N' in miltifasta file. (base) ? output_2_test git:(master) ? more scaffolds.fasta | grep -Ho N * | uniq -c 12 dra...1577 days ago
- ➜ bin git:(master) ✗ ./canu usage: canu [-version] [-citation] \ [-correct | -trim | -assemble | -trim-assemble] \ [-s <assembly-specifications-file>] \ -p <as...
2113 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len...2137 days ago
- ➜ mashmap-Linux64-v2.0 git:(master) ✗ ./mashmap -h-----------------Mashmap is an approximate long read or contig mapper based on Jaccardsimilarity-----------------Example usage:$...
2137 days ago
Comment on "Installing Perl environment on Linux"
...lled ➜ parallelLastz git:(master) ✗ conda create -n my...source deactivate# ➜ parallelLastz git:(master) ✗ source activate my...alPerl(myLocalPerl) ➜ parallelLastz git:(master) ✗ cpanm Parallel::Fo...ne 10.(myLocalPerl) ➜ parallelLastz git:(master) ✗ cpanm Bio::SeqIO -...2140 days ago
Comment on "Installing Salmon for Trinity !"
Sometime, you need to provide the path ➜ Tools git:(master) ✗ PATH=$PATH:/home/tools/anaconda3/bin ➜ Tools git:(master) ✗ export $PATH2141 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...wnloaded, and back at the Linux command line: R CMD INSTALL poRe_0.16.tar.gz The fastq extraction scripts for poRe are in github, so let’s go get those: git clone https://github.com/mw55...2188 days ago
