AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...g and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC r...2138 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...er transcript assembler may produce. It is the "right sequence" you want, and now the only way to get it is to produce way too many assemblies on a good RNA data set, with several me...2044 days ago
1973 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and acc...his tool is on practicality and therefore has the following features: Good performance. On a MacBook Pro...1845 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...ing a multi-threaded design, and further parallelized for distributed-memory systems using MPI to overcome high memory overhead barrier and achieve good parallel and data-size scalab...1762 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and acc...his tool is on practicality and therefore has the following features: Good performance. On a MacBook Pro...1653 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
...ist Scheme aims to train women from a myriad of scientific backgrounds for a year, this, in turn, allows them to even work from home and maintain a good work and home life balance. T...1591 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...nbsp; Our solution is to search the graph in multicores shared memory parallel mode using graph decomposition then use filtering method to generate good quality SNPs. https://arxiv....1560 days ago
Tadpole: an assembler, error-corrector, and read-extender
...abilities of error-correcting and extending reads. It does not do any complicated graph analysis or scaffolding, and therefore, is not particularly good for diploid organisms. T...1552 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...quo;s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class r...1449 days ago