LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with hi...r, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph...2594 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG o...2559 days ago
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Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transi...minimum cost flow analysis of the overlap graph and then merged to contigs an...mation. In comparison with three de Bruijn graph...2503 days ago
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RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the d...ssification of ncRNAs into different classes. The structural information based graph...2496 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC,&nbs...nd CUDA extension is available. It's also included in some data mining environments: RapidMiner...2480 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and app...Meraculous relies on an efficient and conservative traversal of the subgraph of the k-mer (deBruijn) graph...2383 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP curren...s as input alignments files of long reads to sparse short seeds, and outputs a graph...2367 days ago