2010 days ago
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-b...provide a proof of principle by creating a genome graph...2008 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences...ve links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-...1981 days ago
1952 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph...1941 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error cor...1928 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very f...wever, it operates on FASTA files, not the GFA graphs that miniasm makes. Th...p a miniasm assembly, while keeping the assembly in graph...1626 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It u...novo contains two core modules: NextCorrect and NextGraph. NextCorrect can be used to c...s with approximately 15% sequencing errors, and NextGraph...1593 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run sim...meration (aka Bubbles) as part of de novo de bruijn graphs assembly using colours can b...ositive cycles. Our solution is to search the graph...1570 days ago
1570 days ago