LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then t...1466 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonom...grams involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classificat...1462 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical vi...eviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New ba...1446 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package f...TSSs based only on RNA-Seq data and merges them with known TSSs from a public database. This package enables high-qu...1375 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering...bin checking, for retrieving individual genomes The results are stored in a database, where they can be easily exp...1371 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across all...cientists urged us to provide updates of the databases. Accordingly, we have provid...year 2019 (Table-S7-singleyr-2019). Updated databases and code are freely availabl...1280 days ago
OGDRAW - Draw Organelle Genome Maps
OrganellarGenomeDRAW converts annotations in the GenBank or EMBL/ENA ...ar genomes (plastid and mitochondria). Nevertheless, you can upload most database entries. Please...957 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of ge...plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for the respecti...873 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and dec..., miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 cu...872 days ago
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