Results for "HMM"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...es and automatically resolves and installs Bundle::BioPerl with all the dependent Perl modules. Quick Ways Oh, look at your face.. smily hmm :). This is what your are loo...3944 days ago
The DNA of a Successful Bioinformatician decoded !!!
...bioinformatician, but this blog so far now is my personal view on characteristics of successful bioinformatician or computational biologist. Hmm … of course these view...3701 days ago
Bookmarks
Barrnap: Bacterial ribosomal RNA predictor
...chondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RN...2544 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...l composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection...2303 days ago
- +2 more Bookmarks
Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3899 days ago
Pages
Bio++ : C Language libraries for your biological need
...ike GenBank, EMBL or SwissProt,Algorithms for plotting trees, with support for vector formats like SVG, Fig or LaTeX-PGF.So get relax and solve the HMM problems with an ease with Bi...3942 days ago
Top-level pages
- ....wustl.edu/~zuker/Bio-5495/align-html/node3.html General (NW vs. SW vs. HMM, etc.) •http://www.math...E/MULTIPLE/tutorial.html•http://www.cse.ucsc.edu/research/compbio/ Hmms •http://www.medmicro.m...
3940 days ago
- ...ses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DN Glimmer HMM A fast and accurate gene finder based on a GHMM architecture, developed speci...
3936 days ago
- +3 more Top-level pages
News
4273π: Bioinformatics education on low cost ARM hardware
...by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. Hmm don't worry there is one new...3892 days ago
- Do you believe in Zombies stories … Hmm confused? Don’t worry there is a news for you. Scientists from the Integrated Ocean Drilling Program have announced the findings...
3891 days ago
Tags
- Genome sequencing projects have enormous potential for benefiting human endeavors. However, just as acquiring a language's vocabulary does not enable one to speak it, databases that list the amino acid composition of proteins do not directly tell us much about these proteins' higher-level structu...
Tags: Protein, Motif, evolution, Blast, HMM, Dr. R.Sowdhamini, India
3879 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: h...Tags: Encode, UCSC, genome browser, Sequencing, RNA-Seq, Chip-Seq, Epigenomics, Methylation, histone modification, regulatory elements, HMM
3700 days ago
Comments
Comment on "Tools for RNA classification"
...for predicting rRNA genes in genomic sequences. It uses a combination of HMM-based and BLAST-based approac...or identifying tRNA genes in genomic sequences. It uses a combination of HMM-based and comparative sequenc...415 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
HMM tutorial http://jedlik.phy.bme.hu/~gerjanos/HMM/node2.html3703 days ago
- +2 more Comments
