LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-c...2481 days ago
2476 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly...2362 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...developped by Clément Goubert, Laurent Modolo and the TREEP team of the LBBE: http://lbbe.univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en You can find the...2359 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recomb...2353 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver...2353 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured ba...2334 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...l as additional dependencies noted below. Feel free to post your questions and comments at: http://www.aidenlab.org/forum.html http://aidenlab.org/documentation.html2333 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
The frontend is a set of Perl classes that displays the web interface, allowing a user to upload their input files, start a job, display a list of all jobs in the syst...2322 days ago
mojolicious: a next generation web framework for the Perl programming language.
...r, supporting multiple event loops as well as optional pre-forking and hot deployment, perfect for building highly scalable web services. JSON and HTML/XML parser with CSS selector...2318 days ago