Bioinformatics and Sequencing Courses and Workshops
...wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also...o.org/funding-awards/courses-workshops http://meetings.cshl.edu/courses.html http://www.wellcome.ac.uk/Ed...3901 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3773 days ago
List of bioinformatics open source projects/software.
...ence Application") http://wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis softwa...promoter analysis. MeV: Multi-Experiment Viewer http://www.tm4.org/mev.html a desktop application for th...3751 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...rc.au.dk/mailund/coasim/index.htmlcosi The cosi package is writt...://flux.sammeth.net/simulator.htmlForSim ForSim: A Forward Evolu...p/esb/innan/innanlab/software.htmlMendel's Accountant Mendel's A...lemire.freeshell.org/software.htmlTreesimJ A flexible, forward-t...3731 days ago
List of In-silico Binding Site Prediction Tools
...trasbg.fr:8080/scPDB/2011/db_search/about_scpdb.html To assist structure-bas...: http://mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the closest di....mssm.edu/sitehound/sitehound-download/download.html SiteHound identifies protein...3738 days ago
Perl one-liner for bioinformatician !!!
...: http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html http://genomespot.blogspot.com/2013/08/a-selection-of-useful-bash-one-liners.html http://biowize.wordpress.com...3622 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides a...3619 days ago
Commercial and public next-gen-seq (NGS) software
...Reference Illumina has a software list: http://www.illumina.com/pagesnrn.ilmn?ID=245. Some softwares in his blog (http://www.fejes.ca/labels/DNA.html) http://seqanswers.com/wiki/...3513 days ago
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Using Interval Trees to Query Genome Annotations by Position
...cs.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ http://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wikipedia.org/wiki...3543 days ago