Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, st...650 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 201...1060 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignme...890 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using...876 days ago
724 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius....tps://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...l Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html...690 days ago
682 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius....tps://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...l Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html...591 days ago
557 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github...ject.org/web/packages/ashr/index.html consensusDE - http...ductor.org/packages/release/bioc/html/DESeq2.html edgeR -&nbs...ductor.org/packages/release/bioc/html...557 days ago