Bioinformatics and Sequencing Courses and Workshops
Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses coveri...s: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also.../courses-workshops http://meetings.cshl.edu/courses.html...3920 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3792 days ago
List of bioinformatics open source projects/software.
...//wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis softwa.../ Suite of packages for sequencing, searching, etc. Gaggle https://www.gaggle.n...Multi-Experiment Viewer http://www.tm4.org/mev.html a desktop application for th...3770 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief de...rc.au.dk/mailund/coasim/index.htmlcosi The cosi package is writt...://flux.sammeth.net/simulator.htmlForSim ForSim: A Forward Evolu...p/esb/innan/innanlab/software.htmlMendel's Accountant Mendel's A...lemire.freeshell.org/software.html...3750 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins t...:8080/scPDB/2011/db_search/about_scpdb.html To assist structure-bas...mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the closest di.../sitehound/sitehound-download/download.html...3757 days ago
Perl one-liner for bioinformatician !!!
...ed" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulat...fastx toolkit, samtools, vcftools, etc.), there are still times where...010/11/some-unixperl-oneliners-for.html http://genomespot.blogspot.c...election-of-useful-bash-one-liners.html http://biowize.wordpress.com...3641 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of t...ort for many more high-level packages like GenomicRanges, ShortRead, Rsamtools, etc. Documentation GenomicRan...3638 days ago
Commercial and public next-gen-seq (NGS) software
...anger Centre. Features extensive supporting tools for DIP/SNP detection, etc. C++ source MOSAIK - MOSAIK pr...ilmn?ID=245. Some softwares in his blog (http://www.fejes.ca/labels/DNA.html) http://seqanswers.com/wiki/...3532 days ago
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Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariag...notations-by-position/ http://hackmap.blogspot.de/2008/11/python-interval-tree.html...3562 days ago