Results for "Haplotype"
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InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...ectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the o...1106 days ago
- ...lgorithm is: S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81...
2757 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...olymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on in...2655 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...nalyse your genome. Sorry if you were misled by the punchy name! About Chromosome Painting Painting is an efficient way of identifying important haplotype information from dense genoty...2648 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the hi...2337 days ago
EWAS: epigenome-wide association study software 2.0
...ldquo;population epigenetic framework” and can perform: (1) epigenome-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study...2246 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid swe...ing, Ranbow utilizes the assembled haplotypes to improve the accuracy of v...al: for evaluating of the assemble haplotypes by gold standard (long) read...2175 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, des...accuracy. We found that previously described haplotype assembly methods are speciali...amp; Bansal, V. HapCUT2: robust and accurate haplotype assembly for diverse sequenci...2192 days ago
Hapsembler: An Assembler for Highly Polymorphic Genomes
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/2185 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but work...2179 days ago
