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Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format....2858 days ago
Hapsembler: An Assembler for Highly Polymorphic Genomes
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/2180 days ago
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Genome Assembly Tools and Software - PART2 !!
...YBaa.pl is a simple script that parses the output of a BLAT run of a transcriptome vs. a genome assembly. hapsembler 2.21 – Haplotype-specific Genome Assembly ToolkitHapsembler is a haplotype-specific...2690 days ago
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Gap filling or Contigs extensions tools !
...nformatics-solutions/sspacev12/), ATLAS tools (http://www.hgsc.bcm.tmc.edu/content/bcm-hgsc-software), and SCARPA (http://compbio.cs.toronto.edu/hapsembler/scarpa.html). See the PAGI...2170 days ago
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Hapsembler: An Assembler for Highly Polymorphic Genomes
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/Tags: Hapsembler, Assembler, Polymorphic, Genomes, Assembly, Genome
2180 days ago
