Results for "HiFi"
Blogs
Bioinformatics tools for telomere to telomere assembly !
...Analysis) – separates complex mixtures of amplicon targets from genomic samples to cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenberg @z...1006 days ago
Bookmarks
- HiCanu, a significant modification of the Canu assembler designed to leverage the full potential of HiFi reads via homopolymer compression, overlap-based error correction, and aggressive false overlap filtering. More at https://www.biorxiv.org/content/10.1101/2020.03.14.992248v3
1514 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a huma...e, one of the most complex genomes sequenced so far. Hifiasm can produce primary/altern...1242 days ago
- +4 more Bookmarks
Bio-Scripts
- ..._pacbio.log 2>&1 # make 30x haploid coverage for PacBio reads for Hifi reads # error rate from 1 -...aussianlength=t \ minlength=9000 midlength=10000 maxlength=12000 \ out=hifi.fastq.gz > random_reads_pacbi...
942 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila mel...make 30x haploid coverage for PacBio reads for Hifi reads # error rate from 1 -...gth=9000 midlength=10000 maxlength=12000 \ out=hifi.fastq.gz > random_reads_pacbi...932 days ago
Tags
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction with k-mer count information from r...Tags: optimize, HiFi, reads, correct, tools
1006 days ago
