COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k...ected over 99% of reads with 98.8% accuracy, which is, respectively, 10 and 2% higher...2352 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs a...n derived from 11,237 pubmed articles, which describe small-scale experimental studies of transcriptional regulation...2337 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization...e more frequently found. This is mainly due to the historical bias and lack of studies in many taxa. To date, there...2304 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily c...en human and other 12 vertebrates based on original genome alignments pursuing higher...2225 days ago
2218 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs...(similar repeat based alignment approach) HALC was able to obtain 6.7-41.1% higher...2168 days ago
2165 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate rea...2095 days ago
LoRMA: A tool for correcting sequencing errors in long reads
An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative...ad set is at least 75×, the throughput of the new method is at least 20% higher....2078 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolv..., supports biological particulars of model organism frequently used in E&R studies and offers a wide range of di...2056 days ago