3941 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...et al, G3 3(3):427-39, 2013. Full Text Diversity Arrays Technology (DArT) and next-generation sequencing combined: genome-wide, high-throughput, highly informative genotyping for mo...3773 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...a under general isolation by distance models. http://raphael.leblois.free.fr/indel-Seq-Gen A biological sequence simulation program that simulates highly divergent DNA sequences and p...3731 days ago
List of In-silico Binding Site Prediction Tools
...gs are opened to the surrounding solvent. Studying of these pathways is highly important for drug design and...tures. Given a protein structure, Pfinder compares it with a set of 215 highly conserved structural motifs k...3737 days ago
Commercial and public next-gen-seq (NGS) software
...IX OS required. SeqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by Hui Jiang...reference genomes, and carry out post-analysis. ZOOM is developed to be highly accurate, flexible, and user-...3512 days ago
Software packages for next gen sequence analysis
...OS required. * SeqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by Hui Jiang...reference genomes, and carry out post-analysis. ZOOM is developed to be highly accurate, flexible, and user-...3236 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...rofessionals. These Health Professional Training Grants promote excellence in cancer prevention and control by providing incentive and support for highly qualified individuals in outs...2931 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Exp...2205 days ago
Genome Assembly Tools and Software - PART1 !!
...for the high throughput short reads is usually highly memory-intensive, only a few...genome. The contigs produced by Rnnotator are highly accurate and reconstruct full...PEAR is an ultrafast, memory-efficient and highly accurate pair-end reads assem...2679 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...minimazers”, a special type of k-mers) Software (C) https://github.com/lh3/minimap Assembly De novo genome assembly MHAP Produces highly continuous assembly (fully re...2365 days ago