Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, st...653 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 201...1063 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignme...893 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using...879 days ago
727 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...pered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...me.php Mitochondrial Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html Y chromosomes: https://proj...693 days ago
685 days ago
Useful link to teach evolution !
...pered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...me.php Mitochondrial Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html Y chromosomes: https://proj...593 days ago
560 days ago
Tools for Differential expression analysis
...nductor.org/packages/release/bioc/html/apeglm.html ashr - https://git...oject.org/web/packages/ashr/index.html consensusDE - http...nductor.org/packages/release/bioc/html/DESeq2.html edgeR -&nbs...nductor.org/packages/release/bioc/html/RUVSeq.html SARTools -&...560 days ago