Results for "INSTITUTE OF ADVANCED STUDY IN SCIENCE AND TECHNOLOGY"
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PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing too...2964 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapp...tomatically break incorrect scaffolds and flag other errors in an assem...inspection. It reports mis-assemblies and other warnings, and produces...he assembly. http://www.sanger.ac.uk/science/to...2964 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is impor...before diving head first into more advanced analysis tools such as H...r computing environment Retrieving and storing sequencing files ...Seq De novo transcript discovery and differ...2945 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was...in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for iden...e of software for identifying and annotating genomic features as well...2943 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organi...nalysis platforms. AccNET collects phylogenetic and functional information in a n...elements acquired by horizontal gene transfers and not co...
2781 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions...Group – https://groups.google.com/forum/#!forum/rdevtools book on “Advanced R...2938 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...genomes, computes alignments, and then keeps only the parts tha...following the conserved order and orientation of features, such...has parallelization built-in and is designed to run on multi-c...be downloaded from the Broad Institute's web site. An incomplete list of questions and answer...2928 days ago
- Tools for making blobplots or Taxon-Annotated-GC-...mbly data sets as a QC step Blaxter Lab, Institute of Evolutionary Biology...w genome data for contaminants, symbionts and parasites using taxon-annotat...10-01 to Frontiers in Bioinformatics and Comput...
2897 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to intro...cd) to the linuxTutorial folder, and do all the processing inside:...es as it is a language in itself and is used more often to manipul...ill make it easier to understand advanced tutorials such as Illumi...is a program that takes your commands from...2888 days ago
- Records in 4DGenome are compiled thro...ion of experimentally-derived and computationally-predicted int...33,071 experimentally-derived and 3,605,176 computationally-pre...both high throughput datasets and individiual focused studies.&...ames, organism, and detection technology.
2876 days ago
