Phylogenetic for Bioinformatics
...df Phylogenetic Tree Computation Tutorial Overviewhttp://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf MrBayes: A program for the Bayesian inference of phylogenyhttp://golab.unl....3960 days ago
List of bioinformatics open source projects/software.
...ormatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists. AMPHORA ("AutoMated Phylogenomic infeRence Application") http://wolbach...3770 days ago
List of In-silico Binding Site Prediction Tools
...be found here. FINDSITE: http://cssb.biology.gatech.edu/findsite FINDSITE is a threading-based binding site prediction/protein functional inference/ligand screening algorithm th...3758 days ago
Next generation sequencing in R or bioconductor environment
...ntation [ Publication ] PICS The PICS package applies probabilistic inference to aligned-read ChIP-Seq data...easyRNASeq (simplifies read counting per genome feature) DEXSeq (Inference of differential exon usage);&...3638 days ago
Genome Assembly Tools and Software - PART1 !!
...M 2.0.11 – Transcript Assembly tool using Multiple Change-point Inference to improve 3’UTR Annota...sembly of Multi Isoform Transcriptomes VTBuilder is a tool for the inference of non-chimeric contigs from...2699 days ago
Single Cell RNAseq data analysis tutorial !!
.../11/18/gr.212720.116.abstract SCODE: An efficient regulatory network inference algorithm from single-cell RN...NA-seq data https://github.com/PMBio/scLVM Selective Locally linear Inference of Cellular Expression Relati...2364 days ago
Ancestral sequence reconstruction steps !
...le -> arquivo.tre) These steps above, I call of pre-processing to inferences phylogenetic... 5- Perform phylogenetic tree, used Bayesian Inference with Molecular Clock, but is...2193 days ago