Results for "IT"
Comments
Comment on "Benchmarking Perl Module !"
...rformance of the module in terms of its execution time and memory us...k module installed, you can install it using the following command:...rogram that exercises the functionality of your Perl module. This pr...nction to run the benchmark for 100 iterations: timethese(100, {...422 days ago
Comment on "A quick guide to Phred scaling"
...system for representing the quality scores of sequencing reads. It is used to quantify the proba...o Phred scaling: Phred quality scores: Phred quality scores...call accuracy of 99%. Logarithmic scale: The Phred scale is...red score, and p is the probability of an error in the base call...422 days ago
Comment on "Short-read assembly using Spades !"
...eneral steps for short-read assembly using SPAdes: Quality control of raw reads: Before running the assembly, it is important to ensure that t...After running SPAdes, the next step is to evaluate the quality of the assembled genome. Thi...422 days ago
- ...sequencing technologies such as Illumina, SOLiD, and 454. It is a versatile tool that allows users to simulate reads with different error rates, read...uses a profile-based approach to generate synthetic reads. It can simulate reads with diffe...
422 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...check using which perl - it should give you the perl that's located within your conda environment. In...ory. When you install packages via cpan it will also print the folder pe...a perl-lwp-simple this will definitely install into conda.423 days ago
Comment on "Short-read assembly using Spades !"
...bler) is a popular tool for short-read assembly. It can assemble reads generated...: SPAdes can be downloaded from the official website (http://cab.spbu.ru/software...dir> Replace read1.fastq and read2.fastq with the names of the input files...427 days ago
Comment on "Tools for Sequence translation !"
...nverting a DNA or RNA sequence into its corresponding protein sequen...rs to translate a DNA sequence into its corresponding protein sequen...equences into amino acid sequences. It supports several genetic code...ns, including sequence translation. It supports several genetic code...427 days ago
Comment on "Tools for Differential expression analysis"
...y expressed between two or more conditions or groups. There are seve...ly used for analyzing RNA-Seq data. It uses a negative binomial dist...xpression analysis of RNA-Seq data. It uses a generalized linear mod...s tool is a part of the Cufflinks suite and is used for differential...427 days ago
Comment on "Tools for RNA classification"
...l tools available for RNA classification, each with its own strengths and limitation...riance model approach to identify RNA homologs. It is particularly useful for id...l that uses a support vector machine (SVM) algorithm to classify RNA sequences....427 days ago
Comment on "Basic command-line to run BLAST"
...called "words," and searching for matches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and ca...427 days ago
