Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from a normal d...2519 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...(C++) https://github.com/mourisl/Lighter QuorUM Error corrector for Illumina reads using k-mers Software...trang/GSM Mash Species identification using assembled or unassembled Illumina, PacBio, and ONT data (based...2368 days ago
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List of visualization tools for genome alignments
...viewer; NGS compatible http://www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm to enumerate all unique sequences in an entire Illumina sequencing run http://www.so...2280 days ago
Some useful Bioinformatics links
...CajNY_7PE5xVPv6OoLe7hn9TeUjcZ5umREOzNoPMWkfYH58RS6uxm3vm4e4BG2AA_WKW84i6egKK271NwMq-NfzA%3D%3D nanoporetech/ont-assembly-polish: ONT assembly and Illumina polishing pipeline https://g...2238 days ago
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Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward almost close...2162 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using...own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina for...--cov-cutoff auto -o spades_assembly_all_illumina -1 is input file...822 days ago
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