2545 days ago
DNA testing companies around the globe !
It was realized in the 1940s that DNA molecules are passe...ng (also called genotyping), these include forensic analysis of human DNA samples, and...e exome sequencing; consumer focused healthcare big data spin out from Complete Genomics;...2501 days ago
List of genome announcement, notes and reporting journals
Faced with an increasing number of articles describing DNA data and a need for more appropriate venues to present these data, some publishers and journals...plemental material to present data or analysis. Link: https://mra.asm.o...ata sets from high-throughput analysis of genotypes, phenotypes, gen...2023 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
A laboratory (normally lab) is a facility that provides...: www.cdfd.org.in/Research Areas: Automated genome analysis, bacterial genetics, cancer b...hemical systems including solar energy conversion, analysis of pollutants and waste-water...2378 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an inters...mbling large genomes from NGS data caught our attention for seve...from high coverage short read data. SGA is designed as a modular...s paired end and/or mate pair data to build scaffolds from the c...arge genomes using compressed data str...2343 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of P...ultithreading (with option -Dusethreads), which is important for many NGS analysis packages (e.g. Trinity). In t...2336 days ago
List of cancer genomics research web resources !
Major web resources for cancer geno...cghub.ucsc.edu/ Comprehensive data repository; huge data size EGA https://www.ebi.ac.....canevolve.org/ Comprehensive analysis of tumor profile; Data from 90 studies involving more th...tion and variation; automated analysis pipeline GDSC http://www.can...2335 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-ti...), and string graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned...on tool for nanopore sequence datahttps://github.com/jgurtowski/nano...eaderReal-time conversion and analysis of nanopore readshttps://gith...2335 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads...f-order reads from paired-end data files Code: $ r...mp library from your existing data like this. Code: $ cat as...eterozygous rate for sequence data Code: $ kmercountexac...ically accelerates subsequent analysis pipelines by a similar factor...2285 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstratio...language and NCBI BLAST+. Get Data Grab some data to play with. Grab some cow a...st, we need to tell blast about our database. BLAST needs to do some p...with less. Lets try a medium sized data set...2258 days ago