3510 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad T...at allows for the opening and analysis of DNA sequencing files -...ns, COSMIC mutations, and CNV data for cell lines. Does not req...network connection for local databases. View and search PubMed in...mic Variations and many other databases to retrieve up-to-date annot...3556 days ago
3510 days ago
A guide for complete R beginners !
This tutorial is intended to introd...d to perform some basic analysis: load a table, plot...lication specific tasks. e.g. analysis of microarray experiments...again and again on different data Disadvantages Lack of a...ownload and save the tutorial data set from http://bioinformatics...3376 days ago
Software packages for next gen sequence analysis
...or Next Generation Sequencing data analysis. * JMP Genomics - Next ge...e genomes, and carry out post-analysis. ZOOM is developed to be high.... Supports Illumina and SOLiD data. De novo Align/Assemble * ABySS...pecifically optimized for the analysis of large numbers (millions) o...3257 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is...one leading method in -omics data analysis and visualization. Fol...apestry.org/ Caleydo Visual analysis framework targeted at biomolecular data. Visualization of interdepend...ronment composed of a central database and a visual editor, built ar...2301 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biologic...and quantitation of their volumes. PocketPicker Grid-based technique for the analysis of protein pockets. PocketPic...2216 days ago
2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...om high-throughput sequencing datasets; calls variants found in <...udying using ion channels for analysis of single RNA/DNA structures)...K) Output: Downstream Analysis of Variants PrediXcan D...”; no actual expression data used, only in silico expression;...2923 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clusteri...organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https://www.b...ment tools is that, it performs enrichment analysis in real-time (v1.1 and above)...2886 days ago