Results for "Insertion"
Blogs
Computer simulation of genetic mechanism !!
...ype Data for Pedigree Structures http://bioinformatics.org/simped/ Simprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnre...2975 days ago
BBTools for bioinformatician !
...rate is the number indicating substitution, insertion, or deletion (X, I, D). Ex...tations. You can specify the number of snps, insertions, deletions, and Ns per read,...tations. You can specify the number of snps, insertions, deletions, and Ns per read,...2271 days ago
Bookmarks
- ...ads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphism...
2873 days ago
- ...ics: use `max_weight` for Maximum Weight Matching heuristics with the Insertion step, use `backbone` for Maximum Weight Matching heuristics without the Insertion step, use `greedy` for Greedy...
2700 days ago
- +10 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...the string graph. MindTheGap 1.0.0 – Detection and Assembly of Insertion VariantsMindTheGap is a software that performs detection and assembly of DNA insertion variants in NGS read datasets...2686 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ge Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus....ing to allow use of Illumina sequencing to screen for retrotransposon insertion mutations, and includes a sof...3780 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...Genotype Data for Pedigree Structures http://www.hgsc.bcm.tmc.edu/content/simpedSimprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnre...3737 days ago
- +5 more Top-level pages
News
- ...bor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next genera...isalignment to the reference genome cannot obscure the presence of an insertion or deletion. Scalpel's innova...
3547 days ago
- ...n of homozygous SNPs from Variant Call Format (VCF) file and for filtering based on heterozygous SNPs, multi-nucleotide polymorphisms (MNPs) and insertion-deletions (InDels). Multi-omi...
2363 days ago
Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...ciently and accurately computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, transloca...3871 days ago
- ...nd animals. The program then goes on to look at the tools used by biotechnologists such as restriction enzymes, plasmids, vector and vector less insertion of genes into genomes, and th...
3804 days ago
Bio-Scripts
Perl script to insert the DNA string in genome
...my $file = $ARGV[0]; # input fasta file (genome file) my $out = $ARGV[1]; # output fasta file my $chr="test"; #insertion chromosome my $pos=10; # position of the insertion my $seqI = "AAAA"; #sequence...2659 days ago
Insert the sequence at desire location in multi-fasta file with Perl
#!/usr/bin/perl use warnings; use strict; use Bio::SeqIO; use Bio::Seq; use File::Copy; #ARGV[0] should be in following format --- Keep the coordinate sorted b...2314 days ago
Comments
- ...ing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulate different types of sequencing errors, such as substitution, insertion, and deletion errors. dw...
416 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...NT] Mismatch penalty for SW-alignment. [3] -O --open-pen [INT(,INT,INT,INT)] Gap open penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [5(,5,5,5)] -E --...2123 days ago
