Results for "Institut of Population Genetics"
Top-level pages
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference asse...L Salzberg - most of whom are at The Institute for Genomic Research in Mary...Ruiqiang Li at the Beijing Genomics Institute....e Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence A...3530 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference as...L Salzberg - most of whom are at The Institute for Genomic Research in Mary...Ruiqiang Li at the Beijing Genomics Institute....e Max-Planck-Institute for Molecular Genetics. * SSAKE - The Short Sequence...3253 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ocator Description: (Broad Institute): does not perform realignment...MuTect Description: Broad Institute, identification of somatic poi...SOLUTE Description: (Broad Institute); can estimate purity and ploi...racts data from the mixed DNA population Input: HAPSEQ segdat or se...2920 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that man...detection methods this number is expected to increase. On the other hand; In genetics, the term palindrome refers t...2222 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a...ina read pairs sequenced from mixed populations at extremely high and variab...n was developed by DOE Joint Genome Institute to improve Newbler genome asse...m glands, or rapidly evolving viral populati...2697 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...s. ancestor -- Any organism, population, or species from which some other organism, population, or species is descended by r...ter states is the best. phylogenetics -- Field of biology that deals...ed into the two areas of phylogenetics and taxonomy. taxon -- Any n...2473 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large populati...2362 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circu...bout the network as a whole at the species and/or population level. Few tools publish...nsionality reduction algorithms https://www.broadinstitut...2299 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on...rg/ LTR_FINDER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Str...2285 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies cru...nd SNP and genotype calling (bcftools) GATK http://www.broadinstitute.org/gsa/wiki/index.php/The_G...2107 days ago
