Results for "Integrated genomics"
Top-level pages
alignment: the mapping of a raw sequence read to a location...dled with SAMtools, for identifying and filtering genomics variants. bowtie: widely use...command line tools for identifying and filtering genomics variants. Created by Heng Li,...2890 days ago
Genome Assembly Tools and Software - PART1 !!
...e Trinity-based Iterative Metagenomics Assembler TriMetAss is an ex...anding problems in functional genomics. Rnnotator is an automated so...dles large datasets. CLC Genomics Workbench 8.5.1 – Assem...es InteMAP 1.0 – Integrated Metagenomic Assembly pipeli...2707 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-p...le that provide any growl application LyonsLab/coge - CoGe (Comparative Genomics) Platform hirose31/inspect-p...2510 days ago
List of visualization tools for network biology
...ut.org/ BiologicalNetworks Efficient integrated multi-level analysis of micro...protein interaction maps. http://www.ariadnegenomics.com/downloads/ PIVOT La...Pathview.r-forge.r-project.org/ PINA Integrated platform for protein intera...2309 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing...ncing run http://www.sourceforge.net/projects/sewal STAR A web-based integrat...2305 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze t...ence in molecular biology, next-generation sequencing based testing, clinical genomics, and personalized medicine fo...2285 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads...l Omega | Overlap-graph de novo Assembler for Metagenomics https://omega.omicsbio.org/....edu.cn/ICEberg/index.php Satsuma - Evolution and Genomics http://evomics.org/learning/...2263 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose majo...Global rigid searchShape complementarity, hydrogen bonds and electrostatic Integrat...2223 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to...(although we won't encounter them in this book) It lend itself well to being integrat...2204 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on...enotype and SNP calling : SOAP2 http://soap.genomics.org.cn/index.html Single-sam...2117 days ago
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