Illumina based assembly pipeline steps !
...e assignment, mutation calling and sequence quality checks (Nextclade) Individual variant screenshots with annotation tracks (ASCIIGenome) Intersect variants across callers (BCFT...891 days ago
2641 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
...and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store only those read-pairs or reads who intersect some region around the varian...2053 days ago
313 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates ...Tags: UpSetR, R, Package, Visualization, Intersect, Properties
1937 days ago