Results for "JAVA languages"
Bio-Scripts
➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250...seq/releases Monday, July 9, 2018: 10:35:42 CMD: java -Xmx64m -XX:ParallelGCThreads...itTester.jar 0 Monday, July 9, 2018: 10:35:42 CMD: java -Xmx...2138 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-HP-Pro-3335-MT:~/D...1548 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/rele...the generated command line without running it --java-options 'OPTION1[ OPTION2=Y ....e given string of options to the java JVM...
2086 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ------------------------------------------------...Tcl/8.6.7-GCCcore-6.4.0 Java/1.7.0_21...Theano/0.5.0-goolf-1.4.10-Python-2.7.3 Java/1.8....2045 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@S...do samtools view -b aln-pe.mapped.sorted.bam $i > aln-pe.mapped.sorted.$i.bam; java -Xmx...2015 days ago
- jit@jit-HP-Pro-3335-MT:~$ java -version openjdk version "11.0.6" 2020-01-14 OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu118.04.1) OpenJDK 64-Bit S...
1550 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx...1348 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq...paired interleaved reads=100k length=250 mininsert=400 maxinsert=600 gaussian java -ea...1001 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Brian Bushnel...it appears that the merge created new errors, undo it. Java Parameters: -Xmx This will be passed to Java to s...987 days ago
- # Make sure that Java v8+ is installed: java -version # Install Nextflow curl -fsSL get.nextflow.io | bash # Add Nextflow binary to your PATH: mv nextflow ~/bin/ # OR system-wide installation: # sudo mv nextflow /usr/local/bin
974 days ago
