splitbam: splits a BAM by chromosomes
...as found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar splitbam.jar -p OUT/__CH...2618 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...itional information about particular regions. The program is written in Java in order to provide a graphic...of computer platforms; indeed its name stands for "Local Alignments with Java". Currently it exists in two...2617 days ago
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2482 days ago
MOSS: A System for Detecting Software Similarity
...ection algorithms (at least, over those known to us). Moss can currently analyze code written in the following languages: C, C++, Java, C#, Python, Visual Basic, Javascript, FORTRAN, ML, Haskell,...2334 days ago
LIBSVM -- A Library for Support Vector Machines
...model selection Probability estimates Various kernels (including precomputed kernel matrix) Weighted SVM for unbalanced data Both C++ and Java sources GUI demons...2463 days ago
2457 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...rative genomics. Various processes including insertion/deletion and inversion could cause the degeneration of CHSs. Results Here we present a Java software CHSMiner that detect...2355 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and...2346 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate al...2309 days ago