Results for "Java Hibernate Framework"
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Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth...ylogeny and Reconstructing Phylogenetic Trees: http://aleph0.clarku.edu/~djoyce/java/Phyl...3956 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good c...p://www.ncsa.uiuc.edu http://www.w3.org/ http://archive.ncsa.uiuc.edu Java Tutorial java.sun....3141 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative geneti...ll Text The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation...Genome Res 20(9):1297-303, 2010. PubMedCentral A framework for variation discovery and g...3790 days ago
List of bioinformatics open source projects/software.
...te/ Component-based workflow framework for data analysis Armad...ll (programming language) BioJava http://biojava.org/wiki/Main_Page Java (programm...e https://www.gaggle.net/ A framework for interoperability between...wser http://bioviz.org/igb/ Java-based desktop genome browser Inte...3767 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://w...phenotypic traits in a flexible (meta-)population framework. http://nemo2.sourceforge.net...3747 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sa...the Canada's Michael Smith Genome Sciences Centre. JAVA/OS i...his list. Alternate Base Calling Rolexa - R-based framework for base calling of Solexa da...3529 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of...the Canada's Michael Smith Genome Sciences Centre. JAVA/OS i...s list. Alternate Base Calling * Rolexa - R-based framework for base calling of Solexa da...3253 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different p...estry.org/ Caleydo Visual analysis framework....org/ Pathway Explorer Interactive Java drawing tool for the construction...xtensive ontology and an integration framework http://www.cs.bilkent.edu.tr...2297 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool designed for...Reformat is compatible with any platform that supports Java 1.7...support bash shellscripts, replace "reformat.sh" with "java -ea...
2724 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ion: command-line; written in Java, “to run halvade a refe...s SNPs and INDELs, written in Java, no dependencies, straightfor...nterface, writting in C++ and Java Input: Output: HOMOG Des...n; Provides linear regression framework, Pathway Association Analysis...2919 days ago
