Results for "Javascript; Database: MySQL; Microarray data Analysis; Comparative Genomics; NGS; Proteomics; Molecular Phylogenetics; Teaching"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence re...ory saving and convenience of data inquiry, high-throughput short reads data is a...sting features in metagenomic data. The software is particularly useful...lp scientists use optical map data.Once complete, it will encapsulate a...2696 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the ac...uition" endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATI...oxes (discussed ahead) in your pseudocode. Do not include data dec...2669 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer...s, therefore the fragment size distribution can be learned empirically for each WGS data set...2532 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. m...;- a tool for backing up your data usin...open source repository garu/Data-Printe...ver for the MySQL and MariaDB databases...plication that serves KeePass database entri...n LyonsLab/coge - CoGe (Comparat...2499 days ago
- It is often necessary to import sample textbook data into R...Quite frequently, the sample data is i...;read.xls from the gdata...system. > library(gdata) ...k = loadWorkbook("mydata.xls"...ocumentation > mydata =&nb...code samples above assume the data fil...
2499 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ance...pping of coding sequences, for discovery of new genes and (by reference to sequence data ban...2472 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses...rom reference sequences and RNA-seq data (k-mer...ession of transcripts using RNA-seq data (use...rial haplogroup classifier from NGS data (k-mer ba...ectly from unassembled raw sequence data fro...2381 days ago
- When you have both Illumina and Nanopore data, then SP...flag is required for MDA (single-cell) data --met...lag is required for metagenomic sample data --r...of assembling Advanced options: --dataset...speed) read 1 and read 2 of the MiSeq data th...
2361 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) i...e population of input cells Useful for comparative...e the useful links: Single Cell RNAseq data anal...w-level analysis of single-cell RNA-seq data A step-b...r models applied to single-cell RNA-seq data sep...2361 days ago
- RNA-sequencing (RNA-seq) has a wide variety of application...s. We review all of the major steps in RNA-seq data anal...pping. A survey of best practices for RNA-seq data analysis...flinks. EBI RNA-Seq exercise An open RNA-Seq data ana...
2360 days ago
