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LIBSVM -- A Library for Support Vector Machines
...lgorithm proposed in this paper:R.-E. Fan, P.-H. Chen, and C.-J. Lin. Working set selection using second order information for training SVM. Journal of Machine Learning Research...2480 days ago
Opera: An optimal genome scaffolding program
...16-0951-y.Song Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. Journal of Computational Biology, Sep...2362 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bac...2333 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implem...2247 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based...2117 days ago
LSC :a long read error correction tool
...Hung Wong Improving PacBio Long Read Accuracy by Short Read Alignment [Manuscript] PLoS ONE 2012. 7(10): e46679. doi:10.1371/journal.pone.0046679...2115 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA structures. Paper: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060120...2094 days ago