2871 days ago
Genome Assembly Tools and Software - PART1 !!
...itable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analy...slation for either RNA-seq or DNA-seq SOLiD assemblies....Sequencher 5.4.1 – DNA Sequence Assembly and Analysi...hasing genomic variants using DNA sequencing reads, also called...2688 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar...lly reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...sequence isolated at random from a cDNA library, used for identificat...do with any other clade. repetitive DNA -- Sequences of DNA that are...2464 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing fina...http://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web...ional genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java...2286 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual mov...a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus,...he donor and the host. Over the longer term, foreign DNA may become “domesticate...852 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint re...ctive dot plot for genome-genome alignments https://dnanexus.github.io/dot/ Zoho Acco...ication — an evolutionarily conserved role for DNA inverted repeats in the genom...2243 days ago
2247 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental i...ldquo;Evaluation of the diseaseācausing potential of DNA sequence alterations”...that would have occurred if the element were neutral DNA, but did not occur because th...2205 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) ha...ion with an empirical scoring function Other Sites (DNA, RNA, Metals) CHED We...nter A knowledge-based method for the prediction of DNA-protein interactions DISPLAR...2204 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open sourc...which make it easy to manipulate strings of characters (for example, strings of DNA bases and protein amino acid...2185 days ago