Results for "Ka"
Bio-Scripts
Calculate ATGC percentage in parallel with perl
...es ) { my $pid = $pm->start($names[$child]) and next NAMES; checkATCG($names[$child]); $pm-...it_all_children; print "Everybody is out of the pool!\n"; sub checkATCG { my $name=shift; my $DN...2652 days ago
Calculate some statistics for a DNA alignment with Perl
...= map { $_->display_id } $alnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq1id, $seq...4f \n",$_ , $results->[0]{$_}); } my $results2 = $stats->calc_all_KaKs_pairs($alnobj); for my $...2645 days ago
Plot the density of genes in R
...heck if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %in% rownames(installed.packages())){ library(ggplot2) } else { install.packages("ggplot2") library(gg...2280 days ago
Plot custom gene density with R
library(karyoploteR) pp2246 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2150 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence...ject" unless $new_seq->isa(__PACKAGE__); $to_append = $ne...Back to Article Listing Two package Sequence::Nucleotide; # fi...my ($start,$end) = @_; return (__PACKAGE__ . '::Subsequence')->new($...2177 days ago
Installing Porechop on Ubuntu !
...ating /home/urbe/anaconda3/lib/python3.6/site-packages/porechop copying build/li...py -> /home/urbe/anaconda3/lib/python3.6/site-packages/porechop copying build/li...fo to /home/urbe/anaconda3/lib/python3.6/site-packages/porechop-0.2.3-py3.6.egg-i...2102 days ago
- ...Downloading https://files.pythonhosted.org/packages/f2/94/3af39d34be01a24a6e65....0-py2.py3-none-any.whl Installing collected packages: argparse Successfully in...py in /home/urbe/anaconda3/lib/python3.6/site-packages (2.7.1) Requirement alrea...
2095 days ago
Install Python locally on shared Linux server !
...which is located in your home directory: ~/python/Python-#2.7.11/python Install pip #Pip is a program used to help us easily install python packages After installing python lo...2094 days ago
Installing Busco version 4.0.6
...ng environment: done ## Package Plan ## environment lo...o=4.0.6 The following packages will be downloaded:....5 MB The following NEW packages will be INSTALLED: _r...14c3975_0 The following packages will be UPDATED: libp...1449 days ago
