Software packages for next gen sequence analysis
...of finished or draft sequence. Released as a package providing an efficient suff...is built on an iterative variation of the Rabin-Karp string search algorithm, wh...as part of the Vancouver Short Read Analysis Package * MACS - Model-based Analys...3256 days ago
Comprehensive list of visualization tools for biological pathways
...networks http://jdesigner.sourceforge.net/Site/JDesigner.html KaPPA View Plant pathways http://kpv.kazusa.or.jp/ KEGG Atlas Inter...ogle Maps API http://www.g-language.org/PathwayProjector/ PATIKA Integrated environment...2301 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...free-standing multi-application package-- SNP/Indel analysis, CNV p...nopore Reads, written in Python; Package comes with 3 programs, marg...ic caller; unlike other software packages, treats effects fully prob...s Input: multiple Output: LINKAGE Description:three main p...2922 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...olks dedicated to improving their communities. The David & Lucile Packard Foundation: Nonprofit...earch to scientists affiliated with U.S. research institutions. The Mary Kay Foundation: The Mary Ka...2951 days ago
2727 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...ltaneously. ------------ Home page:http://genescf.kandurilab.org/ R...utions of Linux might work as well. Documentation:http://genescf.kandurilab.org/documentation.php...2885 days ago
Genome Assembly Tools and Software - PART1 !!
...O-alignment, and Paired-end Read LinkAge COCACOLA: a general fram...COmposition and paired-end read LinkAge MaxBin 2.2 – Bin...g a very efficient strategy. The package integrates the Oases pipeli...ly Metassembler is a software package for reconciling assemblies...2699 days ago
Awesome perl frameworks, libraries and software - PART 1
...Perl PSGI web server ronilaukkarinen/weed - Heavily Xcha...r/MultiMarkdown-CMS - Package to assist with publishing a...bsp;- Perl Devel::NYTProf symkat/Daemon-Control - Daemon...interface to the Twitter API kasei/perlrdf - Official re...2503 days ago
2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from...rgets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation...erent Markov chain models (using k-words) R package http://www-rcf.usc.edu/~fs...2385 days ago