Results for "Ka"
Bio-Scripts
...n non-Spark tools) gatk SparkTool toolArgs [ -- --spark-runner sparkArgs ] Getting help ga...[] Using GATK jar /media/jitendra/OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0.2.1-local.jar Running:...2086 days ago
#Install older version of R Packages !
#Install older version of R Packages ! require(devtools) install_version("IdeoViz", version = "0.9.1", repos = "http://cran.us.r-project.org")2071 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2066 days ago
Installing pb-assembly on Linux !
...OpenFOAM/2.1.1/DP fluka/2011.2b-5...OpenFOAM/2.2.x/DP fluka/2011.2c-0...c bioconda pb-assembly Fetching package metadata ........... Solvi...narayan@hmem00 ~]$ conda list # packages in environment at /home/un...2045 days ago
Installing Platypus on Ubuntu !
...ting previously unselected package libpython3.6-dev:amd64. Pr...bdir@#/usr/local/lib#g;s#@-PACKAGE_VERSION@#1.9#g' htslib.pc.t...vs/py27/lib/python2.7/site-packages/Cython/Compiler/Main.py:36...vs/py27/lib/python2.7/site-packages/Cython/Compiler/Main.py:36...2030 days ago
Setting up falconUnzip conda environments for genome assembly !
...ng environment: done ## Package Plan ## environment lo...ssembly The following packages will be downloaded:....6 MB The following NEW packages will be INSTALLED:...Downloading and Extracting Packages python-2.7.15 | 13...2000 days ago
Bash commandline to install Anaconda !
...ltk-3.4-py37_1 ... installing: openpyxl-2.6.1-py37_1 ... installing: packaging-19.0-py37_0 ... installi...change /data/sata_data/workshop/wsu29/anaconda3/lib/python3.7/site-packages/xonsh/conda.xsh no change...1566 days ago
Bash command to install Miniconda !
...miniconda3 Unpacking payload ... Collecting package metadata (current_repodata....Solving environment: done ## Package Plan ## environment lo...s/main/linux-64::conda-4.7.12-py37_0 conda-package-han~ pkgs/main/linux-64::co...1566 days ago
Bash command to install bwa, samtools, picard !
....8 MB The following NEW packages will be INSTALLED: _a...Downloading and Extracting Packages certifi-2019.11.28 | 15....0 MB The following NEW packages will be INSTALLED: bz....7 MB The following NEW packages will be INSTALLED: _r...1566 days ago
Bash command to install GATK, Bedtools and SnpEff !
...- gatk The following packages will be downloaded:....5 MB The following NEW packages will be INSTALLED: ce...Downloading and Extracting Packages pip-20.0.2 | 1....stall bedtools Collecting package metadata (repodata.json): d...1566 days ago
