Results for "KeGG"
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...he latter is also suitable for non-programmers. Orange Bioinformatics provides access to publicly available data, like GEO data sets, Biomart, GO, KEGG, Atlas, ArrayExpress, and PIP...3492 days ago
- ...for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Au...
2873 days ago
- ...ation. Taxonomic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggNOG or KEGG Bar charts, word clouds, Vor...
2835 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
...r selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST...2121 days ago
- ...is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled w...
2013 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and me...e lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or...is performed through the K numbers against the KEGG reference pathways. ...1964 days ago
- KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computati...y, against a nonredundant set of KEGG GENES. Annotate Sequence in K...2016) BlastKOALA and GhostKOALA: KEGG tools for functional characte...
1964 days ago
PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of m...1540 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...l Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your ge...1426 days ago
- ...l role. The significance of the terms and groups is automatically calculated. ClueGO is easy updatable with the newest files from Gene Ontology and KEGG.
1354 days ago
