LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as ma...2080 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long...In the package, we provided a compiled bwa, so the user needn't to install bwa. LR_Gapcloser uses the alignments...1448 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...d on MPI, is also available in this package and has been proved to be scalable, so that its allows the study of very large datasets. SiLiX is already included in the analysis...1968 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model...1710 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...Adding read depth information to contigs Fixing sequence truncation that can occur in Racon Adding circularising links to circular contigs if not already present (so they display...1612 days ago
1558 days ago
HASLR: a tool for rapid genome assembly of long sequencing reads
HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requir...1553 days ago
SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:1538 days ago
HASLR: a hybrid assembler which uses both second and third generation sequencing reads
HASLR, a hybrid assembler which uses both second and third...rate genome assemblies. Our experiments show that HASLR is not only the fastest assem...other tools on most of the samples. Availability. HASLR is an open source tool availa...1459 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
...sembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that already had a potential link base...1181 days ago