Results for "Lastz"
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LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designe...encing technologies such as Roche 454. More at http://www.bx.psu.edu/~rsharris/lastz/ Thesis: http://www.bx.psu.e...2932 days ago
YASS :: genomic similarity search tool
...produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds t...2917 days ago
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Top-level pages
Some useful Bioinformatics links
...quences Reversed - Biology Stack Exchange https://biology.stackexchange.com/questions/8160/blast-dna-sequences-reversed LASTZ http://www.bx.psu.edu/miller_lab/dist/README.lastz-1.02.00/README.lastz-1.02.00a...2234 days ago
Bio-Scripts
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR...2291 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2118 days ago
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Comments
- Understanding lastz http://www.bx.psu.edu/~rsharris/rsharris_phd_thesis_2007.pdf
2279 days ago
- The latest relase of LastZ at http://www.bx.psu.edu/~rsharris/lastz/newer/
2844 days ago
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