Results for "Line"
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Taverna Workflow Management System
...rkbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of...3930 days ago
- ...ls:* CuffDiff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical Output...es a list of likely variants in VCF format Pipelines are for those who are comfor...or variant calling in exome data.To run the pipeline you will need Rubra: https://...
3667 days ago
Ten recommendations for creating usable bioinformatics command line software
...s software varies greatly in quality. In terms of usability, the command line interface is the first experi...time a tool will be used. Here I present ten recommendations for command line software author’s tools...3633 days ago
UCSC Genome Browser and Blat software !
...enome Browser and Blat application binaries built for standalone command-line use on various supported Linu...ermine which set of binaries to download, type "uname -a" on the command line to display your machine type....3013 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-spe...
2942 days ago
- ...atabase of amino acid sequences, then using these matches to calculate a lineage probability index (LPI) sc...ult interpretation. A brief tutorial page is also available on-line.
2888 days ago
Linux command line exercises for NGS data processing
...used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to...used more often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl...2888 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it al...
2881 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated f...2641 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...tabases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operati...2769 days ago
