Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and...424 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets' % Total % Received % Xferd Average Speed...883 days ago
Comment on "Download desire version of Blast software !"
Blast v2.12 wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.12.0+-x64-linux.tar.gz945 days ago
1523 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
wget https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz--2020-02-03 11:05:58-- https://github.com/philres/ngmlr/releases/download...1556 days ago
Comment on "How to set up SSH on Ubuntu 18.04"
The SSH server is not installed by default on Ubuntu desktop systems but it can be easily installed from the standard Ubuntu repositories. To install and enable SSH on your...1559 days ago
Comment on "Perl one-liner for bioinformatician !!!"
This tutorial is useful https://blogs.oracle.com/linux/the-top-10-tricks-of-perl-one-liners-v21958 days ago
Comment on "Installing Perl environment on Linux"
If Conda is installed ➜ parallelLastz git:(master) ✗ conda create -n myLocalPerl perl perl-app-cpanminusSolving environment: done ## Package Plan ## environm...2129 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
We now need to install the poRe dependencies in R, which is very easy: R source("http://www.bioconductor.org/biocLite.R") biocLite("rhdf5") install.packages(c...2177 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM,...2177 days ago