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Results for "Linux"

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  • Rahul Agarwal

    Subprocess pkg

    Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE...

    Tags: python, linux, PIPE

    3541 days ago

  • Jit

    #Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux

    Tags: Remove, line, sed, linux

    2602 days ago

  • Jit

    Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size

    Tags: split, linux, size

    2488 days ago

  • Surabhi Chaudhary

    Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

    Tags: sed, unwanted, illegal, remove, correct, fasta, linux

    2337 days ago

  • BioStar

    Installing BLAT on Linux !

    It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://users.soe.ucsc.edu/~kent/src/ I found that the latest blast is now version 35 and that the code to download was: blatSrc35.zip. However, you can also get pre-compiled binaries at...

    Tags: blat, install, linux, alignment

    2055 days ago

  • Rahul Agarwal

    Linux advantages

    https://www.forbes.com/sites/jasonevangelho/2018/07/30/ditching-windows-heres-how-ubuntu-updates-your-pc-and-why-its-better/#7aa6fa5f7c23 https://www.forbes.com/sites/jasonevangelho/2018/07/23/5-reasons-you-should-switch-from-windows-to-linux-right-now/#70c74923777b

    Tags: linux, windows

    1549 days ago

  • BioStar

    Perl one-liner for beginners !

    I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Forces your line to be called in a loop. Allows you to take lines from the diamond operator (or stdin) -p Forces your line to be called in a loop. Prints $_ at the end   This ...

    Tags: perl, oneliner, linux, handy, script, codes

    1374 days ago

  • LEGE

    Where is Bio::SeqIO installed in my Linux system ?

    How to find the location of the module installed

    Tags: perl, module, path, location, linux

    1165 days ago

  • LEGE

    Ventoy: an open source tool to create bootable USB drive

    Ventoy is an open source tool to create bootable USB drive for ISO/WIM/IMG/VHD(x)/EFI files. With ventoy, you don't need to format the disk over and over, you just need to copy the image files to the USB drive and boot it. You can copy many image files at a time and ventoy will give you a boot me...

    Tags: Ventoy, open, source, tool, create, bootable, USB, drive, linux, window

    1033 days ago

  • Neelam Jha

    Installing ELGG on Ubuntu !

    Elgg is an open-source and highly customizable framework used for building an online social environment. It provides a simple and powerful user interface that helps to manage and build your content through a web browser. Elgg offers a rich set of features including messaging, microblogging, file-...

    Tags: elgg, host, ubuntu, linux, elgg3.x

    704 days ago

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