Results for "Linux Filesystem"
Bio-Scripts
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $...naconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % R...9k $ sha256sum Anaconda3-2019.03-Linux-x86_64.sh 45c851b7497cc14d5c...x86_64.sh $ bash Anaconda3-2019.03-Linux-x86_...1559 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --2020-02-01 13:25...Saving to: `Miniconda3-latest-Linux-x86_64.sh' 100%[==========..._libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main...libgcc-ng pkgs/main/linux-64::...1559 days ago
Bash command to install bwa, samtools, picard !
...nconsistency: - defaults/linux-64::numba==0.43.1=py37h962f231_0 - defaults/linux-64::anaconda==2019.03=py37_0..._anaconda_depends pkgs/main/linux-64::_anaconda_depends-2019.03...bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0...2 KB binutils_impl_linux-64-2...1559 days ago
Bash command to install GATK, Bedtools and SnpEff !
(my_GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package...ED: certifi pkgs/main/linux-64::certifi-2019.11.28-py38_0...3.8-7 pip pkgs/main/linux-64::pip-20.0.2-py38_1 pyth...LED: bedtools bioconda/linux-64::...1559 days ago
- #More at https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&target_version=1804&target_type=deblocal $ wget https://developer.download...
1557 days ago
Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install mummer [sudo] password for jit: Reading package lists... Done Building dependency tree Reading...1554 days ago
Install python pip and numpy on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install python-pip Reading package lists... Done Buildi...e2624e205445ab77a1848acdaa2929a00eeef6b16eaaeb20/numpy-1.16.6-cp27-cp27mu-manylinux1_x86...1554 days ago
Install miniasm in Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install miniasm Reading package lists... Done Building dependency tree Reading state information... Done...1554 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo]...stical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free sof...STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu STRINGI_LIBS=-licu...utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu...1554 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1542 days ago
