SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS P...ing systems, including Windows XP SP3 32bit, Windows Vista 32bit, Windows 2008 Server, Windows 7 32bit and 64bit, U...2352 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifi...2349 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for...ps://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux,...2342 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating s...2333 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available in the perl ecosystem (alon...hus has no hard dependencies, comes with a built-in development and production server and many other features one n...2319 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows use...ge formats. xmatchview and xmatchview-conifer are written in python and run on linux...2318 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2316 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Pe...nt, form validation, testing framework, static file server, CGI/PSGI detection, fir...framework. Full stack HTTP and WebSocket client/server implementation with IPv6, TLS...2302 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...ts. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version,...cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scala...2234 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or p...ein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the most important...2162 days ago